Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015954287.1_cds_XP_016493199.1_83333
CDS Infomation

[gene=LOC107812567] [db_xref=GeneID:107812567] [protein=topless-related protein 4-like isoform X2] [protein_id=XP_016493199.1] [location=join(30696..30775,31124..31303,31404..31517,31642..31800,31914..32103,32178..32301,32495..32607,32834..33002,33139..33248,33345..33414,33577..33650,33742..33837,33969..34064,34508..34635,34733..34967,35046..35210,35331..35423,35539..35685,35933..36043,36114..36293,36655..36783,36888..36983,37461..37649,37835..38001,38131..38326)] [gbkey=CDS]
Sequence

ATGTCTTCGCTGAGCAGAGAGCTGGTGTTTTTGATACTTCAGTTCCTTGATGAGGAGAAA
TTCAAAGATGCTGTTCACAAATTGGAGCAAGAATCAGGGTTTTTCTTTAACATGAGGTAT
TTTGACGAAATGGTGGCGAATGGAGAATGGGATGAAGTGGAGAAGTACTTATCGGGTTTC
ACCAAGGTTGACGATAATAGATACTCCATGAAAATATTCTTCGAGATTCGAAAGCAAAAG
TACCTAGAAGCCCTAGATAGGAACGACCGTCCTAAAGCTGTTGATATCCTAATTAAGGAC
TTGAAGGTGTTTTCGGCTTTTAATGAAGACCTTTTCAAAGAAATTACGCAACTTTTGACT
CTTGACAACTTTAGGGATAACGAGCAATTATCTAAATATGGAGATACTAAGTCTGCTAGG
AGTATAATGCTTCTGGAACTCAAAAAATTGATAGAAGCAAATCCCCTGTTTCGTGATAAG
CTGAACTTTCCCACCTTGAAGAACGCAAGGCTGCGAACATTAATCAACCAGAGTTTGAAC
TGGCAGCATCAGCTTTGTAAGAGCCCGAAGCCTAATCCTGACATAAAGACCTTATTTGTG
GACCATTCTTGCGGTCCGTCACAGCCAAATGGTGCACGGGCTCCATCCCCTGTAACTCAT
CCACTCATGGGAGGTGTTCCAAAGCCCGGGGTTTTTCCACCTCTTGGTGCTCATGGTGTA
AATCCTTTTCAGCAAGCACCTGGTCCTCTGCCAAATGCTCTTGCTGGGTGGATGACTAAT
CCTCCTCAAGTTTCTCATCCTTCTGCTTCTGCTGGACCAATAGGTTTTACCACTCCAAAT
AATGCAGCAGCTATGCTAAAGCGTCCTAGGACTCCTACGAATAACCCAACAGTGGACTAT
CAAACAGCTGACTCGGAGCACATGTTAAAGAGATCAAGACCTTTTGGTGTATCAGATGAA
GTAAATAATATGCCTATCAATATTTTGCCTGGTGGGTACTCTGGCCAAAGCCATGCACAA
AGTTCGTATTCATCAGATGATTTGCCCAAGGCTTCTGTCATGACTCTAAATCAGGGTTCA
GCAGTCAAGAGCATGGATTTCCATCCGGCGCAGCAAATTCTGCTTCTTGTTGGTACTGGC
ACAGGAGAGATTATGATTTGGGAATTGGGTGGTAGGGAGAGGATTTCTCATAGAAGTTTC
AAGGTTTGGGATCTTGGGCAATGCTCAGTGGCTTTACAGGCATCTTTGGCAAGTGAGTAC
TCTGCATCAGTTAATCGTGTAATGTGGAGTCCTGATGGCACTCTGTTTGGTGTTGCATAC
TCTAAGCACATTGTGCACATCTACTCCTATCACGGTGGCGATGATCTTAGAAACCACCTT
GAGATTGAGGCTCATTCAGGAAGCGTCAATGATCTTGCTTTTTCCTATCCTAACAAACAG
ATTTGTATTGTTACCTGTGGAGATGACAGGCTTATTAAGGTATGGGATGCGGTGTCAGGG
GCTAAGCAATATACATTTGAGGGCCATGAGGCACCAGTCTATTCAATATGTCCACATCAC
AAAGAAAATATTCAGTTTATCTTCTCAACTGCAATTGACGGGAAAATAAAGGCATGGTTG
TACGATAACATGGGTTCGAGAGTTGACTATGATGCACCAGGTCATTCATCAACCACAATG
GCTTATAGTGCCGACGGAACAAGGTTATTCTCATGTGGGACTAATAAAGAAGGAGAGTCA
TATCTTGTTGAATGGAATGAAAGTGAAGGAGCTGTAAAGCGTACATTTATGGGTCTAGGG
AAGCGTGCTGGCGGGGTGGTGCAATTTGACACTACTAAAAATAGATTTTTGGCAGCTGGT
GATGAGTTCATGATAAAATTTTGGGACATGGACAGTATAAACATGCTGACAAGTACTGAA
GCTGAGGGTGGCATACCGGCTTCTCCTTGCCTCCGATTTAACAAGGAAGGAATATTGCTG
GCTGTTTCGACAAGTGACAATGGGATAAAAATTTTAGCAAATGCAGATGGTCTTAGGCTT
TTAAGATCCATGGAAAATCGCCAATTTGATGCTTCTAGAGTAGCCTCTGCTTCTGTGGTG
AAGCCCCCCACAATGGGAAGTTTTGGGCCTCCTAGCACTTCTGTTGCCGCAAGCTTTGTA
GATCGAGGAGTGCCAATGACATCCATGGTTTCCATGAATGGTGAAAATCGCAACTTAGCT
GATGTAAGGCCAAGAGCTGCAGAAGAGACTGTTGATAAATCTAGAATCTGGAAACCGACT
GAAATTAATGAACCATCGCAGTGCAGATCCTTGAAGCTTCCAGACAGTTTAACAGCGACC
AGGATTTCAAGGTTAATATATACAAATTCAGGATTAGCTATACTTGCATTAGCTTCCAAT
GCTGTGCACAAACTTTGGAAATGGCCCAGAAATGAGCGAAACCCGACAGGGAAGGCTAAT
GCAAGTATTGTTCCACAACTTTGGCAACCTTCAAATGGGACGCTGATGACAAATGATATT
ACTGACACAAATCCTGAAGACGCTGTTCCATGTTTTGCTCTCTCAAAGAACGACTCTTAT
GTGATGTCAGCTTCTGGAGGGAAAATATCATTGTTTAATATGATGACATTTAAGACTATG
ACAACATTTATGCCTGCTCCACCTGCGGCAACCTTTTTGGCTTTTCATCCTCAAGATAAT
AATGTTATTGCCATAGGCATGGATGACTCCTCTATCCAAATATACAATGTCCGGGTTGAC
GAGGTAAAGATAAAGCTCAAAGGACATCAGAAAAGAATAACTGGGCTCGCTTTTTCGCAT
TCTCTCAATGTGCTTATATCTGCAGGAGCAGATTCTCAGCTGTGCGTTTGGAGCACTGAT
GCTTGGGAGAAGCAAACAAGCAAATACTTGCAGATTCCTGCTGGGAGAGCAGCTGCTCCT
CAAGCAGATACTCGTGTACAATCTCACCAGGACCAGACACAATTGTTGGTAGTACATGAA
ACGCAGATAGCCATATTTGAAGCTTCTAAACTGGAGTGCCTCAAACAGTGGGTCCCTAGA
GAAGCGAGTGGTCCAATTACACATGCAACATATTCTTGTGATAGCCAGTCTATATTTGTT
AGTTTTGAAGATGCAAGTGTAGGTGTTCTCAGTGCGTCAACATTGCGATGGAGATGTCGG
ATCAATCCTACTTCCTACCTTCCCAGCAATCCAAGTTCAAGGATGCATCCACTTGTTATT
GCTGCACATCCATCTGATCCTAATCAGTTTGCATTGGGACTAAGCGACGGTGCTGTTATT
GTACTTGAGCCGCTTGAGTCTGAAGGCAAATGGGGAACCTTGCCACCAGCTGAAAATGGT
GCTGGGCCAAGCACTTCAGGTGCTGCAAATTCAGATCAACCGCAGAGGTAG

Peptide Sequence

PEP ID

XP_016493199.1
PEP Infomation

PREDICTED: topless-related protein 4-like isoform X2 [Nicotiana tabacum]
Sequence

MSSLSRELVFLILQFLDEEKFKDAVHKLEQESGFFFNMRYFDEMVANGEWDEVEKYLSGF
TKVDDNRYSMKIFFEIRKQKYLEALDRNDRPKAVDILIKDLKVFSAFNEDLFKEITQLLT
LDNFRDNEQLSKYGDTKSARSIMLLELKKLIEANPLFRDKLNFPTLKNARLRTLINQSLN
WQHQLCKSPKPNPDIKTLFVDHSCGPSQPNGARAPSPVTHPLMGGVPKPGVFPPLGAHGV
NPFQQAPGPLPNALAGWMTNPPQVSHPSASAGPIGFTTPNNAAAMLKRPRTPTNNPTVDY
QTADSEHMLKRSRPFGVSDEVNNMPINILPGGYSGQSHAQSSYSSDDLPKASVMTLNQGS
AVKSMDFHPAQQILLLVGTGTGEIMIWELGGRERISHRSFKVWDLGQCSVALQASLASEY
SASVNRVMWSPDGTLFGVAYSKHIVHIYSYHGGDDLRNHLEIEAHSGSVNDLAFSYPNKQ
ICIVTCGDDRLIKVWDAVSGAKQYTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL
YDNMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESYLVEWNESEGAVKRTFMGLG
KRAGGVVQFDTTKNRFLAAGDEFMIKFWDMDSINMLTSTEAEGGIPASPCLRFNKEGILL
AVSTSDNGIKILANADGLRLLRSMENRQFDASRVASASVVKPPTMGSFGPPSTSVAASFV
DRGVPMTSMVSMNGENRNLADVRPRAAEETVDKSRIWKPTEINEPSQCRSLKLPDSLTAT
RISRLIYTNSGLAILALASNAVHKLWKWPRNERNPTGKANASIVPQLWQPSNGTLMTNDI
TDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPAPPAATFLAFHPQDN
NVIAIGMDDSSIQIYNVRVDEVKIKLKGHQKRITGLAFSHSLNVLISAGADSQLCVWSTD
AWEKQTSKYLQIPAGRAAAPQADTRVQSHQDQTQLLVVHETQIAIFEASKLECLKQWVPR
EASGPITHATYSCDSQSIFVSFEDASVGVLSASTLRWRCRINPTSYLPSNPSSRMHPLVI
AAHPSDPNQFALGLSDGAVIVLEPLESEGKWGTLPPAENGAGPSTSGAANSDQPQR

Transcript Sequence

Gene sequence data has not been registered.